Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs8070353 chr17:39338459 C/A 7.11E-7 133 13.17 46.03 42.1 KM Plot
TGCT rs8070863 chr17:39338380 A/G 6.24E-7 134 13.17 46.03 42.18 KM Plot
TGCT rs8079623 chr17:42027330 C/G 0.000141 134 25.77 38.2 43.68 KM Plot
TGCT rs8082955 chr18:37833937 C/T 1.67E-5 134 19.23 111.63 40.57 KM Plot
TGCT rs8097584 chr18:37833825 T/C 1.67E-5 134 19.23 111.63 40.57 KM Plot
TGCT rs8097962 chr18:37837257 C/A 1.67E-5 134 19.23 111.63 40.57 KM Plot
TGCT rs8106839 chr19:37958475 C/G 1.78E-5 134 42.27 38.2 57.52 KM Plot
TGCT rs8109038 chr19:38015709 A/G 1.39E-13 134 17.1 35.37 46.3 KM Plot
TGCT rs8115487 chr20:2406736 A/T 0.000125 132 37.95 65.47 163.3 KM Plot
TGCT rs835 chr6:42665888 C/T 3.93E-6 131 37.95 45.1 23.82 KM Plot
TGCT rs844911 chr20:23138430 C/T 3.75E-9 130 45.47 37.5 11.03 KM Plot
TGCT rs872453 chr4:154727131 T/C 0.000108 134 40.57 46.02 45.1 KM Plot
TGCT rs923077 chr12:129276708 C/A 1.39E-5 134 29.53 44.28 41.33 KM Plot
TGCT rs9322584 chr6:157004693 G/A 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs9349236 chr6:42591275 C/T 2.74E-8 133 37.95 50.8 20.6 KM Plot